Journal of Comparative Physiology A
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Preprints posted in the last 30 days, ranked by how well they match Journal of Comparative Physiology A's content profile, based on 11 papers previously published here. The average preprint has a 0.00% match score for this journal, so anything above that is already an above-average fit.
Pieroni, E. M.; Baylis, H. A.; O'Connor, V.; Holden-Dye, L. M.; Yanez-Guerra, L. A.; Imperadore, P.; Fiorito, G.; Dillon, J.
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Nociception is an essential response for organisms to avoid potential harm and promote survival. Its molecular determinants are largely conserved across Eumetazoa. TRPV receptors are polymodal ion channels exhibiting selective peripheral expression and functional coupling that underpins nociception and pain modulation in complex organisms. However, the execution of protective behaviours triggered by TRPVs is also found in species with a simpler nervous organisation, thus encouraging their investigation in invertebrate model organisms to increase understanding of animal nociception. Cephalopods represent an interesting invertebrate phylum with respect to the evolution of the nervous system, whose complexity suggests it might support pain-like states that exist in vertebrates. This possibility is reflected by the inclusion of cephalopods in the UK and EU animal welfare legislations. Despite this, there is poor characterisation of cephalopod molecular nociceptors. For this reason, we used in silico analysis to identify two TRPV channels in Octopus vulgaris genome (Ovtrpv1 and Ovtrpv2). We validated the putative transcript sequences and highlighted prevalent expression in sensory tissues. We investigated the functional competence of these TRPVs by heterologously expressing Ovtrpv1 and Ovtrpv2 cDNA into Caenorhabditis elegans null mutants of the orthologous genes, ocr-2 and osm-9 respectively. Ovtrpvs successfully rescued the aversive response to chemical and mechanical noxious stimuli in the C. elegans mutants, suggesting these receptors are polymodal nociceptors. Additionally, complementary investigation using Xenopus laevis oocytes showed Ovtrpv1 and Ovtrpv2 form an active heteromeric channel gated by nicotinamide. This study highlights Ovtrpvs as an important route to better understand nociceptive detection in cephalopods.
Reese, M.; Kanost, M.; Gorman, M.
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Iron is an essential nutrient for all types of organisms, including insects and the microbes that infect them. We predicted that insects fed an iron-supplemented diet would accumulate more iron in their hemolymph, and, because infectious microbes acquire iron from their hosts, that this extra iron would increase the severity of bacterial infections. To test this hypothesis, we studied the effects of dietary iron supplementation on infection outcomes in Manduca sexta (tobacco hornworm). Larvae were fed an artificial diet, with or without antibiotics, or the same diets supplemented with 10 mM iron. Control and iron-treated larvae were inoculated with non-pathogenic Escherichia coli or the entomopathogenic Enterococcus faecalis, and bacterial load and larval survival were measured. We found that dietary iron supplementation increased the iron content of hemolymph by approximately 20 fold; however, contrary to our prediction, this increase in iron did not result in an increase in the bacterial load of either E. coli or E. faecalis. The effect of iron supplementation on survival was more complicated. As expected, for larvae inoculated with nonpathogenic E. coli, iron supplementation had no effect. For larvae inoculated with E. faecalis, the effect of iron supplementation depended on whether antibiotics were present in the diet. Without antibiotics, iron supplementation prolonged larval survival; with antibiotics, iron supplementation decreased larval survival. The results of this study do not support the hypothesis that dietary iron supplementation increases infection severity in M. sexta. Instead, the results support the viewpoint that the relationship between dietary iron and infection outcome is complex.
Palou, A.; Tagliabue, M.; Beraneck, M.; Llorens, J.
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The rat vestibular system plays a critical role in anti-gravity responses such as the tail-lift reflex and the air-righting reflex. In a previous study in male rats, we obtained evidence that these two reflexes depend on the function of non-identical populations of vestibular sensory hair cells (HC). Here, we caused graded lesions in the vestibular system of female rats by exposing the animals to several different doses of an ototoxic chemical, 3,3-iminodipropionitrile (IDPN). After exposure, we assessed the anti-gravity responses of the rats and then assessed the loss of type I HC (HCI) and type II HC (HCII) in the central and peripheral regions of the crista, utricle and saccule. As expected, we recorded a dose-dependent loss of vestibular function and loss of HCs. The relationship between hair cell loss and functional loss was examined using non-linear models fitted by orthogonal distance regression. The results indicated that both the tail-lift reflex and the air-righting reflexes mostly depend on HCI function. However, a different dependency was found on the epithelium triggering the reflex: while the tail-lift response is sensitive to loss of crista and/or utricle HCIs, the air-righting response rather depends on utricular and/or saccular integrity.
Nogueira, B. R.; Leon-Alvarado, O. D.; Khadempour, L.
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Honeypot ants represent an example of convergent evolution, where a group of workers specialized in storing liquid food in their crops (i.e., stomach) has independently evolved multiple times across different ant genera. While seasonal resource scarcity and arid conditions are thought to drive the evolution of repletism, the role of environmental variables in this process has not been tested. With this is mind, species ensemble models were computed to assess suitability and richness areas, and the importance of predictors. Predictor importance was compared between genera and groups occupying a similar geographical area. Niche overlap and similarity between honeypot ant species were also evaluated to determine whether they occupy similar environmental spaces. Similarity was mainly found within genera, and Leptomyrmex and Myrmecocystus showed striking niche differences. Overall, Leptomyrmex distribution was mainly influenced by atmospheric bioclimatic variables like precipitation and temperature, while Myrmecocystus had soil bioclimatic variables as the most important predictors for their current distribution. Our results indicate that honeypot ants species currently do not occupy the same environmental space, and are not experiencing the same contemporary environmental stressors. While our results suggest that contemporary environmental factors cannot explain the convergence of honeypot ants, future research will examine past climatic conditions along with investigations into the ant genomes to understand more about the causes and consequences of the convergence.
Baciadonna, L.; Nityananda, V.
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Judgment bias tasks are increasingly used to assess affective states in animals, yet the extent to which they might reflect transient states or stable traits remains unclear. Here, we tested bumblebees (Bombus terrestris) in an active choice task across three repeated sessions to assess individual consistency in the absence of any manipulation. Bees were trained to associate each of two colours with either a high or a low reward, presented in separate chambers. During testing, they were presented with ambiguous colours. Bees were more likely to choose the high reward chamber and to choose more quickly in response to colours closer to the positive colour. The latency to choose the cues showed significant and moderate repeatability across sessions, suggesting a stable, trait-like underlying component. In contrast, the repeatability of the chamber choices was negligible, indicating that such responses might be largely state-dependent and influenced by situational factors. These findings suggest that judgment biases, particularly as assessed through an active choice task reflect states affected by external factors. Active choice tasks may help disentangle stable behavioural traits from transient affective states in invertebrates.
Ocana, F. M.; Gomez, A.; Salas, C.; Rodriguez, F.
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The functional organization of the teleost telencephalic pallium remains poorly understood, particularly regarding the presence of modality-specific sensory domains and their topographic arrangement. Here, we used in vivo wide-field voltage-sensitive dye imaging to map sensory-evoked neural activity across the dorsal surface of the telencephalic pallium of adult goldfish. Somatosensory, auditory, gustatory, and visual stimulation revealed distinct, modality-specific domains primarily located within the dorsomedial (Dm) and dorsolateral (Dl) pallium. Within Dm, somatosensory and auditory stimuli activated partially overlapping territories in the caudal subregion (Dm4), exhibiting clear somatotopic and tonotopic organization along the mediolateral axis. Gustatory stimulation selectively engaged Dm3, where different tastants activated spatially distinct but partially overlapping domains. A more rostral subregion (Dm2) responded only to high-intensity somatosensory stimulation, suggesting involvement in processing negatively valenced inputs. Visual stimulation activated a circumscribed area within the dorsolateral pallium (Dld2),that closely matched cytoarchitectural boundaries. Pharmacological blockade of ionotropic glutamate receptors markedly reduced sensory-evoked responses, indicating that these maps depend on glutamatergic synaptic transmission. Together, these findings show that the goldfish pallium contains distinct, spatially organized sensory representations and a refined internal functional architecture. This organization suggests that pallial topographic sensory maps may not be exclusive to mammals and birds. Based on these results, we propose that dorsomedial and dorsolateral pallial regions may be functionally comparable to components of the mammalian mesocortical network, more than to the pallial amygdala or the neocortex. This framework provides a new perspective on pallial organization in teleosts and contributes to understanding the evolutionary origins of the vertebrate pallium. HIGHLIGHTSO_LIVoltage-sensitive dye imaging was used to map sensory responses in the goldfish pallium. C_LIO_LIDistinct sensory areas for somatosensory, auditory, gustatory, and visual modalities were identified. C_LIO_LISome sensory regions in Dm show topographically organized maps. C_LIO_LIFunctional segregation suggests a complex, non-diffuse pallial organization. C_LIO_LIFindings support a novel hypothesis linking Dm and Dld to mammalian mesocortical regions. C_LI
Marmelo, M.; Silva, L.; Ferreira, A.; Doutrelant, C.; Covas, R.
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Sentinel behaviour occurs when individuals use raised positions to scan for predators while the rest of the group forages. Here, we investigated whether a colonial cooperatively breeding species that forages in large groups, the sociable weaver, Philetairus socius, displays sentinel behaviour. This behaviour has been reported in species with similar ecology, behaviour and foraging habits, (e.g. ground foraging in open habitats where aerial predators are common) and, hence, we expected that it could occur in sociable weavers. On the other hand, sentinel behaviour appears to be less common in species that live in very large groups. We used an experimental set-up consisting of an artificial feeding station and perches to assess occurrence of sentinel related behaviours: (i) perching events > 30s on an elevated position, (ii) head-movements and (iii) alarm calling. Birds were seldom observed perching while others fed, and those that did, perched for periods that were too short to be considered as sentinel behaviour (less than 5s on average). Our results suggest that this behaviour is uncommon or even absent in sociable weavers. We discuss whether other factors such as foraging in very large groups, or interspecific foraging associations might make sentinel behaviour less important in this species.
Mukherjee, I.; Liao, J.
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Although predation is a major driver of group living across taxa and the antipredator benefits of grouping are well established, the energetic costs experienced by groups under predation remain largely unexplored. In the current study, we use wild, white mullet (Mugil curema, Valenciennes 1836), to provide the first real-time quantification of the energetic cost of escape in schooling fish using intermittent, closed-loop respirometry. We found that small groups exposed to predators showed a 53.8% increase in their organismal metabolic rate (MO2) as compared to groups without predator exposure. When we evaluated antipredator behaviors such as escape response, group cohesion, and displacement of the group centroid, we found a positive correlation to energetic costs. We then investigated whether escape responses are socially modulated by comparing the energetic costs of escape across solitary individuals, solitary individuals with visual access to a group, and groups. We found that escape frequency and energetic costs to predation were comparable across social contexts, indicating that escape may be an intrinsic survival response independent of cues from group members. Furthermore, we found that fish exposed to predators showed markedly reduced feeding, suggesting that predation constrains energy acquisition in addition to imposing direct energetic costs. Our results provide the first direct quantification of the energetic costs of escape in a schooling fish, offering new insights into the physiological trade-offs underlying collective antipredator defenses.
Neven, S. L.; Faber, L.; Martin, B.
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Animals must continually balance foraging with the risk of predation. In complex natural environments, this means quickly distinguishing between threats and harmless situations. We investigated how site-associated coral reef fishes decide to escape in response to visual cues mimicking predator attacks, using controlled underwater presentations of looming stimuli at varying speeds. We measured escape responses across species and social contexts, comparing them to predator attack speeds observed in the same habitat. Escape responses were highly sensitive to the speed of the looming stimulus, with no responses occurring at low speeds. The speeds triggering escape matched those of predator attacks, whereas cruising swim speeds never triggered a response. Species employed distinct antipredator strategies: Brown Chromis foraged away from shelter with high responsiveness, whereas Bicolor Damselfish remained shelter-dependent with lower escape propensities. Contrary to expectations, the social factors did not affect responses in this study. These findings demonstrate that reef fish are highly sensitive to the approach speed of objects, with species-specific strategies further shaping behaviors. By combining realistic visual threats with natural predator attack data, this study offers insight into how animals make escape decisions in complex, real-world environments.
Ondina Ferreira da Silva Teixeira, C.; van de Waal, E.; Laska, M.; Motes-Rodrigo, A.
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Traditionally, primates have been considered primarily visual animals. However, studies across a variety of taxa suggest that, in the context of food evaluation, the reliance on this sense might be more nuanced that previously thought, with dietary specialization and food item properties leading to differences in sensory prioritization. We performed a field-based study assessing the use of sensory cues during food evaluation as well as food-related behaviours such as muzzle contact in two mixed-sex groups of wild vervet monkeys including three age classes over a period of five months (nmonkeys = 44). Using a total of 18868 food evaluation observations collected over 44 hours of focal follows, we found that vervets mainly relied on their sense of vision when evaluating food (96.8% of all instances). Sensory usage varied according to food category and sex differences were only observed in the use of smell for a subset of these. Juveniles initiated muzzle contact and used tactile inspection more often than adults whereas females received muzzle contact more often than males. In addition, the low rejection rates suggest that most food items were familiar to the vervets regardless of age and sex. These findings are in line with optimal foraging theory according to which the food evaluation process should be adapted to the familiarity of food items and allows individuals to maximize their intake of energy and critical nutrients, while minimizing the time and effort in food evaluation.
Frohlich, F.; Mentesana, L.; Deimel, C.; Hau, M.
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Capturing and handling wild animals is essential for ecological and evolutionary research, yet their effects on physiology, behaviour, and reproductive success remain poorly understood. We investigated short- and longer-term consequences of a capture-handling-restraint protocol in wild great tits (Parus major) over three breeding seasons. To assess short-term responses, we measured circulating corticosterone, a metabolic hormone that responds to unpredictable challenges, and automatically recorded provisioning behaviour. We also explored whether environmental and individual traits were related to provisioning latency (i.e., time to resume provisioning after capture). To evaluate longer-term effects, we monitored provisioning in the days following capture and related it to reproductive success (fledgling number and body condition). We predicted that longer handling would increase stress-induced corticosterone and provisioning latency, that these variables would be positively correlated, and that higher corticosterone and longer latencies would be associated with lower reproductive success. After capture, great tits showed elevated corticosterone and delayed provisioning. Contrary to our predictions, handling duration was negatively associated with stress-induced corticosterone in males (but not females) and did not affect provisioning latency. Provisioning latency was unrelated to corticosterone, environmental, or individual variables. Following capture, parents resumed provisioning, and short-term responses had little influence on reproductive success. We show that parental behaviour and physiology are affected by capture restraint protocols on the short term, but offspring condition and survival are not. However, these results should be interpreted cautiously, as our study lacks an uncaptured control group. Our findings highlight that evaluating welfare impacts requires rigorous study design incorporating both immediate and longer-term behavioural and fitness effects.
Clemencon, P.; Barta, T.; Monsempes, C.; Renou, M.; Lucas, P.
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Moth pheromone-sensitive olfactory receptor neurons (Phe-ORNs) encode the intermittent structure of pheromone plumes through precisely timed spikes, a mechanism that is essential for odor plume tracking behavior in flying insects. However, natural olfactory scenes are composed of diverse volatile plant compounds (VPCs) with complex temporal dynamics whose effects on pheromone signal intermittency encoding remain unclear. Two lines of research, encoding of pheromone intermittency and background interference, remain largely disconnected. Here, we performed electrophysiological recordings from moth Phe-ORNs to quantify their responses to turbulent plume-like flickering pheromone stimuli in constant or fluctuating backgrounds of a diversity of VPCs. We found that some VPCs reversibly disrupted the temporal coding of various subregions of the pheromone stimulus and the trial-to-trial variability. While Phe-ORN activation by VPCs partially accounted for the decrease in coding performance, Phe-ORN gain reduction was insufficient to explain the full extent of the disruption. Some VPCs disrupt temporal coding without activating Phe-ORNs, and others activate Phe-ORNs without altering temporal coding. A continuous background noise can induce strong adaptation and limit dynamic range, whereas a fluctuating background can interfere with pheromone pulse encoding by disrupting spike timing. Altogether, these results indicate that the pheromone detection system must contend with multiple forms of background noise rather than a uniform disturbance. Timing is key for olfactory navigation, and our results raise questions regarding how downstream circuits would process noisy sensory inputs. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=196 SRC="FIGDIR/small/713794v1_ufig1.gif" ALT="Figure 1"> View larger version (39K): org.highwire.dtl.DTLVardef@1c44fb6org.highwire.dtl.DTLVardef@14d5982org.highwire.dtl.DTLVardef@12f94a2org.highwire.dtl.DTLVardef@c731ee_HPS_FORMAT_FIGEXP M_FIG C_FIG
Kerjean, E.; Avargues-Weber, A.; Howard, S.
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Despite growing evidence that many animals can evaluate quantities, the ecological relevance of numerical cognition remains debated, particularly outside vertebrates. Would individuals still rely on numerousness if less computationally demanding cues, visual features extracted at the early stage of visual processing, were available to assess quantity? In primates, individuals show a numerical bias as they tend to rely on the number of items rather than non-numerical cues, such as total area, to categorize quantities. In this study, we trained free-flying honeybees to discriminate between two and four items in conditions where numerosity covaried with the total area and perimeter (Experiment Size) or the convex hull (Experiment Space) cues, mimicking ecological contexts. Transfer tests assessed which numerical or non-numerical cues were learned and preferentially used by the bees. Bees primarily relied on numerousness over these non-numerical cues. Individual analyses revealed two consistent strategies: a "numerical bias" strategy, in which bees encoded numerical information while ignoring non-numerical cues, and a "generalist" strategy, where bees flexibly switched between cues and favored non-numerical information when cues conflicted. We further reported improved discrimination when smaller quantities appeared on the left and larger ones on the right, consistent with an oriented mental number line. Together, these findings demonstrate a spontaneous numerical bias in honeybees and reveal that individuals within the same species can adopt distinct strategies when evaluating quantity. Our findings also suggest that distantly related taxa like bees and primates may have independently evolved comparable mechanisms for quantity evaluation.
White, H.; Bosinski, C.; Gabel, C. V.; Connor, C.
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BackgroundHow does neuronal activity change as an animal transitions from being awake to a state of general anesthesia? Previous studies used C. elegans to investigate awake and anesthetized states, emergence from anesthesia, and to establish metrics characterizing how system-wide neuronal dynamics differ under these conditions. This study employs a new technique to image pan-neuronal activity in C. elegans continuously during induction of anesthesia with isoflurane. MethodsC. elegans worms expressing pan-neuronal nuclear RFP and cytosolic GCaMP6s were imaged with light sheet microscopy to measure single cell activity in the majority of neurons in the animals head during induction via isoflurane exposure. Stable concentrations of isoflurane were maintained throughout the experiment by measured flow vaporization of isoflurane into a specially designed gas enclosure compatible with the imaging system. Building on our previous work investigating emergence from anesthesia, we analyzed ensemble neuronal activity, spectrograms of frequency over time, and metrics of information flow between neurons. ResultsInduction of isoflurane anesthesia caused a progressive reduction in neuronal activity over the course of 40 minutes. Spectrograms indicated a loss of bulk signal power across all frequencies, notably in low frequencies too. State Decoupling and Internal Predictability were among the most useful metrics for discriminating the anesthetized state, demonstrating induction kinetics that are the inverse of emergence. However, each animal does not arrive at the anesthetized state at the same time; response times are highly individualized. ConclusionsInformation metrics of neurodynamic activity demonstrate that isoflurane induction results in a gradual increase in neuronal disconnection and disorganization. Thus, at the level of individual neuron connectivity and system dynamics, the induction of anesthesia in C. elegans nematodes is in essence the reverse of emergence. Induction however occurs more rapidly and shows marked variability between individuals. Future genetic studies will show which molecular targets define sensitivity to volatile anesthetics like isoflurane. Summary StatementIsoflurane-induced unconsciousness is a common phenomenon across species. Does the induction of anesthesia arise by distinct state transitions, or through gradual changes in system dynamics when activity is measured at the level of individual neurons?
Borrajo, M.; Callejo, A.; CASTELLANOS, E.; Amilibia, E.; Llorens, J.
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Vestibular schwannomas (VS) cause vestibular function loss by mechanisms still poorly understood. We evaluated the vestibulo-ocular reflex by the video-assisted Head Impulse Test (vHIT) in patients with planned tumour resection by a trans-labyrinthine approach. The vestibular sensory epithelia were collected and processed by immunofluorescent labelling for confocal microscopy analysis of sensory hair cell subtypes (type I, HCI, and type II, HCII), calyx endings of the pure-calyx afferents, and the calyceal junction normally found between HCI and the calyx (n=23). Comparing Normofunction and Hypofunction patients, we concluded that worse vestibular function associates with decreased HCI and HCII counts in the sensory epithelia and with increased proportion of damaged calyces. A decrease in the number of HCI and calyx endings of the pure-calyx afferents was recorded to associate with age increase. Partial least squares regression (PLSR) models indicated that VS and age had independent, additive effects on vestibular function. Correlation analyses indicated that lower vHIT gains associate with lower numbers of HCI and increased percentages of damaged calyces. These data support the hypothesis that the deleterious effect of VS on vestibular function is mediated, at least in part, by its damaging impact on the vestibular sensory epithelium. They also provide further evidence for the dependency of the vestibulo-ocular reflex on HCI function and for the calyceal junction pathology as a common response of the sensory epithelium to HC stress.
Requena-Garcia, F.; Jackson, N.; Class, B.; Mitchell, A. C.; Cramp, R. C.; Frere, C. H.
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Social living often confers substantial fitness benefits; however, close spatial association among individuals can also elevate opportunities for pathogen transmission, especially where the populations are dense. Despite this, the extent to which avoidance behaviours are expressed by wild reptiles facing fungal disease remains unclear. We examined Eastern Water Dragons (EWDs; Intellagama lesueurii) in Roma Street Parklands, Brisbane, Australia, where a population is affected by the emerging fungal pathogen Nannizziopsis barbatae (Nb). Using a five-year dataset (2018-2023) spanning 146 individuals, we quantified social distance, as the minimum distance to the nearest neighbour, in relation to the number of diseased conspecifics that overlapped each individuals seasonal core home area. Social distance decreased as diseased conspecifics became more numerous, indicating a strong crowding effect; however, this reduction was weaker for diseased individuals, which maintained larger distances than healthy individuals even under high disease pressure. Together, these patterns support partial social avoidance consistent with behavioural changes in infected individuals, suggesting that infection risk constrains density-driven proximity. Our findings provide new insights into how disease pressure shapes social spacing in reptiles and contribute to a broader understanding of behavioural responses to emerging infectious fungal diseases.
Comas, V.; Pouso, P.; Borde, M.
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Gymnotiform fish emit electric organ discharges (EODs) for both active electroreception and electrocommunication. EOD waveform and rhythm can be modified to cope with diverse environmental challenges. In pulse-type species, EODs are generated by a hierarchical electromotor network controlled by a medullary pacemaker nucleus (PN), which comprises intrinsic pacemaker cells (PM-cells) and projecting relay cells (R-cells). Active electroreception requires the emission of stereotyped EODs, an electromotor output that implies a functional PN configuration in which PM-cells rhythmically time EODs and R-cells transmit coordinated commands to downstream components of the electromotor system. To test whether electrical coupling (EC) between PN neurons supports this functional organization, intrinsic connectivity of the PN in Gymnotus omarorum was examined in brainstem slices using electrophysiology, immunohistochemistry, and dye-coupling analysis. Homotypic connections (PM-PM and R-R) exhibited low-magnitude, bidirectional EC with symmetrical, low-pass filter properties, supporting synchronous yet adaptable pacemaker activity and coordinated descending commands. Heterotypic connections (PM-R) also displayed bidirectional, symmetrical coupling but revealed direction-dependent filtering: an apparent high-pass behavior from PM- to R-cells and a low-pass behavior in the opposite direction. Together with precise PM-to-R discharge timing, direction-dependent filtering suggests a role of PM-cell axons in shaping signal flow. Dye coupling and immunohistochemical evidence further indicate that PN neurons are interconnected via gap junctions, likely formed by connexin 35. Thus, EC-based connectivity endows the PN with crucial functional attributes of its exploration mode of operation while preserving the capacity to organize communication signals under the influence of descending inputs, revealing remarkable functional versatility. Summary statementGap junction-mediated intrinsic connections within the electromotor nucleus of electric fish may sustain the emission of signals essential for sensory sampling as well as those supporting communication.
Berglund, G.; Ojha, P.; Ivanova, M.; Perez-Torres, M.; Rosbash, M.
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The Drosophila adult central brain contains 240 circadian neurons, of which there are more than 25 different neuron subtypes based on connectomic data. Recent single cell RNA-seq (scRNAseq) characterization of these neurons "around the clock" also indicates a similar number of molecular subtypes of circadian neurons, but other conclusions from these transcriptomic studies warranted verifying and extending with other approaches. To this end: 1) We used a genetic multiplexing strategy to profile the transcriptomes of circadian neurons from multiple time points in a single experiment, reducing confounding technical variation between timepoints; 2) Large numbers of single nuclei were sequenced (snRNA-seq), which was enabled because the new method EL-INTACT purifies nuclei from frozen heads; 3) We assayed 12 time points under both light-dark (LD) and constant darkness (DD) conditions. These approaches showed dramatic transcriptional differences between time points in many circadian neuron types and enhanced time-of-day gene expression analysis. The data indicate that most of this regulation is transcriptional and circadian. There were however a small number of light-dependent transcripts, including a few that correspond to mammalian immediate-early genes. They probably play a role in the light-regulation of gene expression and behavior in specific neurons, perhaps circadian entrainment or phase-shifting. The results taken together provide a more comprehensive picture of gene expression heterogeneity within adult Drosophila circadian neurons including how intrinsic clock mechanisms and light cues are integrated across circadian neuron subtypes.
King, C. D.; Groh, J. M.
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Eye movement-related eardrum oscillations (EMREOs) appear to consist of a pulse of oscillation occurring in conjunction with saccades. However, this apparent pulse could occur either because there is an increase in energy at that frequency at the time of saccades (a true pulse), or because there is saccade-related phase resetting of ongoing energy at that frequency band, thus appearing like a pulse when averaged in the time domain across many trials. Here we conducted a spectral analysis at the individual trial level in humans performing a visually guided saccade task to determine whether the power at the EMREO frequency (30-45 Hz) is higher during saccades than during steady fixation. We found both an increase in sound power in the EMREO frequency band associated with saccades, i.e. sound pulses at the individual trial level, as well as, phase resetting at saccade onset/offset. While both factors contribute to the apparently pulse-like EMREO signal, phase resetting appears to be more prevalent across participants. The prevalence of phase resetting has implications for the underlying mechanism(s) producing EMREOs as well as functional consequences for how the ear might respond to incoming sound in an eye-position dependent fashion.
Gibbs, B.; Strother, J.; Morgan, C.; Pinton, D.; Canestrelli, A.; Liao, J. C.
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Understanding how fish navigate complex natural environments requires bridging fine-scale biomechanics with ecological behavior. We investigated the volitional movement and energetics of wild red drum (Sciaenops ocellatus) across laboratory, mesocosm, and field settings. Using flow-respirometry, we quantified metabolic costs and swimming kinematics under ecologically relevant flow conditions shaped by bluff bodies mimicking mangrove roots and oyster mounds. Fish swimming in turbulent wakes exhibited reduced oxygen consumption and altered tailbeat dynamics, especially at high flow speeds. In a large outdoor mesocosm, dual accelerometers revealed a rich behavioral repertoire, including maneuvering and rest, which is not easily observable in confined lab settings. Spectral analysis and clustering identified eight distinct locomotory states, highlighting the limitations of summed acceleration metrics. Field telemetry tracked wild red drum across a 54 km estuarine corridor for a three-year period through an array of 36 acoustic receivers, revealing movement patterns shaped by tidal flow and physical habitats. Hydrodynamic modeling revealed that while laboratory trials demonstrated substantial energetic savings at high flows (approaching 100 cm/s), wild fish were detected predominantly in low-velocity microhabitats (<30 cm/s) near structurally complex features. This mismatch suggests that habitat selection is an adaptive strategy driven by ecological factors such as foraging opportunities, predation refuge, and site fidelity, rather than hydrodynamic efficiency alone. Our multi-scalar approach demonstrates that while flow-structure interactions can reduce locomotor costs for fish, habitat use in the wild reflects broader ecological constraints, offering a framework for integrating biomechanics, physiology, and ecology in conservation-relevant contexts.